cell rna seq data analysis Search Results


single cell sequencing portal  (Broad Institute Inc)
90
Broad Institute Inc single cell sequencing portal
Single Cell Sequencing Portal, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pmc08596752-116-48-54?v=Broad+Institute+Inc
Average 90 stars, based on 1 article reviews
single cell sequencing portal - by Bioz Stars, 2026-07
90/100 stars
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rhapsody single cell rna sequencing  (Becton Dickinson)
90
Becton Dickinson rhapsody single cell rna sequencing
Rhapsody Single Cell Rna Sequencing, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pm34143954-248-5-20?v=Becton+Dickinson
Average 90 stars, based on 1 article reviews
rhapsody single cell rna sequencing - by Bioz Stars, 2026-07
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mrna-seq  (SAS institute)
90
SAS institute mrna-seq
Mrna Seq, supplied by SAS institute, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pmc06582245-267-6-16?v=SAS+institute
Average 90 stars, based on 1 article reviews
mrna-seq - by Bioz Stars, 2026-07
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seurat single-cell rna seq analysis r package  (RStudio)
90
RStudio seurat single-cell rna seq analysis r package
Seurat Single Cell Rna Seq Analysis R Package, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pmc07181395-218-10-18?v=RStudio
Average 90 stars, based on 1 article reviews
seurat single-cell rna seq analysis r package - by Bioz Stars, 2026-07
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sclc cell line rna-seq data  (Broad Institute Inc)
90
Broad Institute Inc sclc cell line rna-seq data
Sclc Cell Line Rna Seq Data, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pmc08595642__mmc2-294-36-45?v=Broad+Institute+Inc
Average 90 stars, based on 1 article reviews
sclc cell line rna-seq data - by Bioz Stars, 2026-07
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human ipf single-cell rna-seq data  (BioTuring Inc)
90
BioTuring Inc human ipf single-cell rna-seq data
Human Ipf Single Cell Rna Seq Data, supplied by BioTuring Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pmc09314350-371-2-11?v=BioTuring+Inc
Average 90 stars, based on 1 article reviews
human ipf single-cell rna-seq data - by Bioz Stars, 2026-07
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rna-seq count data and meta-data for all cell lines from the cancer cell line encyclopedia (ccle)  (Broad Institute Inc)
90
Broad Institute Inc rna-seq count data and meta-data for all cell lines from the cancer cell line encyclopedia (ccle)
Rna Seq Count Data And Meta Data For All Cell Lines From The Cancer Cell Line Encyclopedia (Ccle), supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/10__1158_slash_2326___6066__cir___21___0137-92-22-35?v=Broad+Institute+Inc
Average 90 stars, based on 1 article reviews
rna-seq count data and meta-data for all cell lines from the cancer cell line encyclopedia (ccle) - by Bioz Stars, 2026-07
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cell diversity in the mouse cortex and hippocampus rna-seq data  (Allen Institute for Brain Science)
90
Allen Institute for Brain Science cell diversity in the mouse cortex and hippocampus rna-seq data
Cell Diversity In The Mouse Cortex And Hippocampus Rna Seq Data, supplied by Allen Institute for Brain Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/bio_rxiv__2020__05__27__119024-201-8-20?v=Allen+Institute+for+Brain+Science
Average 90 stars, based on 1 article reviews
cell diversity in the mouse cortex and hippocampus rna-seq data - by Bioz Stars, 2026-07
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analysis of single cell rna-seq data using k-nn graph partitions  (MetaCell Inc)
90
MetaCell Inc analysis of single cell rna-seq data using k-nn graph partitions
Analysis Of Single Cell Rna Seq Data Using K Nn Graph Partitions, supplied by MetaCell Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pm31537583-166-0-0?v=MetaCell+Inc
Average 90 stars, based on 1 article reviews
analysis of single cell rna-seq data using k-nn graph partitions - by Bioz Stars, 2026-07
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rna-seq-based analysis of 57,711 genes in 622 human cancer cell lines  (Genentech inc)
90
Genentech inc rna-seq-based analysis of 57,711 genes in 622 human cancer cell lines
Rna Seq Based Analysis Of 57,711 Genes In 622 Human Cancer Cell Lines, supplied by Genentech inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/pmc06884504-7-4-2?v=Genentech+inc
Average 90 stars, based on 1 article reviews
rna-seq-based analysis of 57,711 genes in 622 human cancer cell lines - by Bioz Stars, 2026-07
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model trained on nanopore rna-seq data from a human cell line  (Bambu Vault LLC)
90
Bambu Vault LLC model trained on nanopore rna-seq data from a human cell line
(a) Repeat families ranked by the number of expressed elements identified in the <t>human</t> embryonic stem <t>cell</t> cell <t>line</t> (H9) (b) Overview of the top 100 expressed novel and annotated transcripts that overlap with the HERVH-LTR7 retrotransposon in hESC cell line. For novel transcripts, we only include those with high overlap in novel exons. Top: Fraction of overlap with HERVH and LTR7. Bottom: Expression estimate in H9 hESCs and in the 5 SG-NEx cancer cell lines (c-f) Illustrations of highly expressed transcripts in H9 hESCs that originate from HERVH-LTR7 repeats that show distinct splicing patterns and transcript sequences. Top: transcript annotation colored by estimated full-length read support, with ranks in expression highlighted inside the bracket. Middle: mean read coverage for the specified genomic ranges for each selected gene. Bottom: show repeat masker colored by HERVH (green), LTR7 (light green), and all other repeat types (light grey).
Model Trained On Nanopore Rna Seq Data From A Human Cell Line, supplied by Bambu Vault LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/bio_rxiv__2022__11__14__516358-38-13-0?v=Bambu+Vault+LLC
Average 90 stars, based on 1 article reviews
model trained on nanopore rna-seq data from a human cell line - by Bioz Stars, 2026-07
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single-cell rna sequencing (scrna-seq) analysis  (MetWare Ltd)
90
MetWare Ltd single-cell rna sequencing (scrna-seq) analysis
(a) Repeat families ranked by the number of expressed elements identified in the <t>human</t> embryonic stem <t>cell</t> cell <t>line</t> (H9) (b) Overview of the top 100 expressed novel and annotated transcripts that overlap with the HERVH-LTR7 retrotransposon in hESC cell line. For novel transcripts, we only include those with high overlap in novel exons. Top: Fraction of overlap with HERVH and LTR7. Bottom: Expression estimate in H9 hESCs and in the 5 SG-NEx cancer cell lines (c-f) Illustrations of highly expressed transcripts in H9 hESCs that originate from HERVH-LTR7 repeats that show distinct splicing patterns and transcript sequences. Top: transcript annotation colored by estimated full-length read support, with ranks in expression highlighted inside the bracket. Middle: mean read coverage for the specified genomic ranges for each selected gene. Bottom: show repeat masker colored by HERVH (green), LTR7 (light green), and all other repeat types (light grey).
Single Cell Rna Sequencing (Scrna Seq) Analysis, supplied by MetWare Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+rna+seq+data+analysis/ppr0828407-49-0-11?v=MetWare+Ltd
Average 90 stars, based on 1 article reviews
single-cell rna sequencing (scrna-seq) analysis - by Bioz Stars, 2026-07
90/100 stars
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Image Search Results


(a) Repeat families ranked by the number of expressed elements identified in the human embryonic stem cell cell line (H9) (b) Overview of the top 100 expressed novel and annotated transcripts that overlap with the HERVH-LTR7 retrotransposon in hESC cell line. For novel transcripts, we only include those with high overlap in novel exons. Top: Fraction of overlap with HERVH and LTR7. Bottom: Expression estimate in H9 hESCs and in the 5 SG-NEx cancer cell lines (c-f) Illustrations of highly expressed transcripts in H9 hESCs that originate from HERVH-LTR7 repeats that show distinct splicing patterns and transcript sequences. Top: transcript annotation colored by estimated full-length read support, with ranks in expression highlighted inside the bracket. Middle: mean read coverage for the specified genomic ranges for each selected gene. Bottom: show repeat masker colored by HERVH (green), LTR7 (light green), and all other repeat types (light grey).

Journal: bioRxiv

Article Title: Context-Aware Transcript Quantification from Long Read RNA-Seq data with Bambu

doi: 10.1101/2022.11.14.516358

Figure Lengend Snippet: (a) Repeat families ranked by the number of expressed elements identified in the human embryonic stem cell cell line (H9) (b) Overview of the top 100 expressed novel and annotated transcripts that overlap with the HERVH-LTR7 retrotransposon in hESC cell line. For novel transcripts, we only include those with high overlap in novel exons. Top: Fraction of overlap with HERVH and LTR7. Bottom: Expression estimate in H9 hESCs and in the 5 SG-NEx cancer cell lines (c-f) Illustrations of highly expressed transcripts in H9 hESCs that originate from HERVH-LTR7 repeats that show distinct splicing patterns and transcript sequences. Top: transcript annotation colored by estimated full-length read support, with ranks in expression highlighted inside the bracket. Middle: mean read coverage for the specified genomic ranges for each selected gene. Bottom: show repeat masker colored by HERVH (green), LTR7 (light green), and all other repeat types (light grey).

Article Snippet: Bambu includes a model that was trained on Nanopore RNA-Seq data from a human cell line (see ).

Techniques: Expressing